Skip to content

orthofinder compatibility to pyham #22

@eli1199

Description

@eli1199

Hello,

Is Orthofinder's orhoXML output option compatible with Pyham?

I used the following code to run it:
orthofinder.py -f ./protein_files/ -M msa -x species_info

where protein_files is a folder with all of the protein files for each specie and
species_info is a text file with some information about the species required for orthoxml format

I see Orthofinder is not included in the table of compatibility here: https://github.com/DessimozLab/pyham#table-of-compatibility

Is it currently not possible to use Orthofinder?

Thank you

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions