merge develop #12
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merge develop #12
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* netcdf parallel writing and lon/lat in netcdf file * some changes to get it to (almost) run on hera * lat should be in degrees - remove conversion to radians. * import updates from jswhit/fv3atm * more bug fixes - now works on hera * specify collective access if compression turned on. * use classic model * bug fixes for parallel IO with compression * fix calculation of max compression error * turn off shuffle filter * code simplification * remove debug print * don't use parallel IO for 2d file (since it seems to increase run time) * allow multiple values of output_file, as long as they all start with 'netcdf' * use default chunksize for 2d vars * delete commented out macro ESMF_ERR_ABORT * delete rad2dg * add module_write_netcdf_parallel.F90 * add option to build without parallel netcdf (-DNO_PARALLEL_NETCDF) * fix typo * stub file for building without parallel netcdf lib * allow chunksizes for 2d arrays to be set in model_configure (ichunk2d,jchunk2d) Default is size of array on each write task. * add ichunk3d,jchunk3d,kchunk3d to specify 3d chunksizes. Default is now ichunk3d,jchunk3d same as array size on each PE, kchunk3d=nlevs This results in the fastest writes on hera. * fix typo * put ifdefs in module_write_netcdf_parallel.F90 so no stub file needed * don't need this file anymore * remove module_write_netcdf_parallel_stub.o target * use specified chunksizes for serial IO. If chunksize parameter negative, let netcdf library choose defaults. * update comments * get output_file without esmf call error * syntax fix * fix stub interface in module_write_netcdf_parallel.F90 for cmake build Co-authored-by: junwang-noaa <37633869+junwang-noaa@users.noreply.github.com>
* add namelist variable iau_drymassfixer and use consistent coupled fields * dump out coupled fields in native grid for fv3 * add default(none) for openmp in post_gfs.F90 * update fv3 dycore with reproduce option in g_sum * change fv3 dycore to point to the NOAA-EMC dev/emc branch
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