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03: Mothur tutorials
Melissa Duhaime edited this page Apr 27, 2017
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Resources for learning about and running Mothur for the analysis of 16S rRNA data.
- Schloss Lab MiSeq SOP: https://www.mothur.org/wiki/MiSeq_SOP
- tutorial for running Mothur on Flux (M. Berry): http://deneflab.github.io/flux-tools/lessons/04-running-mothur.html
- former undergrad in the Duhaime Lab, Kaitie Benedek, prepared the following notes based on her experiences running Mothur on flux (April 2017).
References:
- Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. (2013): Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Applied and Environmental Microbiology. 79(17):5112-20.