Skip to content
This repository has been archived by the owner on Mar 22, 2024. It is now read-only.

correct clustering bug #59

Merged
merged 2 commits into from
Oct 28, 2021
Merged

correct clustering bug #59

merged 2 commits into from
Oct 28, 2021

Conversation

manonreau
Copy link
Collaborator

@manonreau manonreau commented Oct 28, 2021

Answer to issue #58

Issue: when running Deeprank-GNN with the louvain node clustering algorithm, Deeprank-GNN was still expecting mcl cluster data due to a lack of specification of the clustering algorithm used when loading the data (in HDF5dataset)

Answer: Update every call of HDF5dataset with clustering information

HDF5DataSet(root='./', database=database, node_feature=self.node_feature, edge_feature=self.edge_feature,
                  target=self.target, clustering_method=self.cluster_nodes)

@manonreau manonreau closed this Oct 28, 2021
@manonreau manonreau reopened this Oct 28, 2021
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant