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Fix isometric to isotropic voxel size
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dkuegler committed Nov 11, 2024
1 parent 47b21d2 commit df98040
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Showing 2 changed files with 3 additions and 3 deletions.
2 changes: 1 addition & 1 deletion FastSurferCNN/data_loader/conform.py
Original file line number Diff line number Diff line change
Expand Up @@ -165,7 +165,7 @@ def options_parse():
"--no_iso_vox",
dest="force_iso_vox",
action="store_false",
help="Ignore the forced isometric voxel size (depends on --conform_min).",
help="Ignore the forced isotropic voxel size (depends on --conform_min).",
)
advanced.add_argument(
"--no_img_size",
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4 changes: 2 additions & 2 deletions run_fastsurfer.sh
Original file line number Diff line number Diff line change
Expand Up @@ -125,10 +125,10 @@ FLAGS:
(smallest per-direction voxel size) in the T1w
image:
If the minimal voxel size is bigger than 0.98mm,
the image is conformed to 1mm isometric.
the image is conformed to 1mm isotropic.
If the minimal voxel size is smaller or equal to
0.98mm, the T1w image will be conformed to
isometric voxels of that voxel size.
isotropic voxels of that voxel size.
The voxel size (whether set manually or derived)
determines whether the surfaces are processed with
highres options (below 1mm) or not.
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