Generate sample IDs from manifest fields #27

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Merged

iamh2o merged 2 commits into main from codex/refactor-analysis_manifest.csv-for-clarity

Sep 9, 2025

Contributor

iamh2o commented Aug 26, 2025

Summary

streamline analysis manifest by removing redundant sample columns
build sample and sample_lane identifiers within rule_common.smk
loosen manifest schema to treat derived identifiers as optional

Testing

pytest

https://chatgpt.com/codex/tasks/task_e_68ad6c17aca88331ba82c849fe68a07d


          Generate sample identifiers from manifest fields

81015ce

iamh2o added the codex label

— with

ChatGPT Codex Connector

89a61f8

iamh2o merged commit 4b69add into main

iamh2o deleted the codex/refactor-analysis_manifest.csv-for-clarity branch

September 24, 2025 21:41

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