[omnibus] Update patch for pyyaml 5.4.1 #7569
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What does this PR do?
Update patch to be applicable to pyyaml 5.4.1.
Motivation
The patch was broken by yaml/pyyaml#378.
Additional Notes
There is an open PR for solving this upstream: yaml/pyyaml#301.
Describe your test plan
Test that YAML loading works properly.