InpaintingPipeline

In-house inpainting pipeline (Rfdiffusion>ProteinMPNN>AF2)

User-friendly implementation for lab members to run an Inpainting pipeline with minimal intervention

Programs

RFdiffusion (v1.1.0)

https://github.com/RosettaCommons/RFdiffusion

ProteinMPNN (Making code cleaner)

https://github.com/dauparas/ProteinMPNN

Colabfold (v1.5.2)

https://github.com/sokrypton/ColabFold

localcolabfold (v1.5.2)

https://github.com/YoshitakaMo/localcolabfold

Special remark

make_inpaint_fixed_positions_dict.py must be in /Path/to/ProteinMPNN/helper_scripts/

contact

danton dot ivanochko at sickkids dot ca