DILiS-lab
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pyproteonet
pyproteonet PublicPython package for imputation, peptide-to-protein aggregation as well as in silico data creation of proteomics data with a specific focus on the development and evaluation of imputation methods in …
Python 2
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Repositories
- opt-synthdata-4tl Public
This is the code repository for the paper "Optimizing ODE-derived Synthetic Data for Transfer Learning in Dynamical Biological Systems".
DILiS-lab/opt-synthdata-4tl’s past year of commit activity - drevalpy-report Public
DILiS-lab/drevalpy-report’s past year of commit activity - CombDNF Public
DILiS-lab/CombDNF’s past year of commit activity - pyproteonet Public
Python package for imputation, peptide-to-protein aggregation as well as in silico data creation of proteomics data with a specific focus on the development and evaluation of imputation methods in proteomics. Also provides proteomics specific imputation methods based on graph neural networks.
DILiS-lab/pyproteonet’s past year of commit activity - GNN_imputer Public
Graph Neural Network Driven Imputation of Missing Abundances in Mass Spectrometry-Based Proteomics
DILiS-lab/GNN_imputer’s past year of commit activity - SimbaML Public
SimbaML is an all-in-one framework for integrating prior knowledge of ODE models into the ML process by synthetic data augmentation. It allows for the convenient generation of realistic synthetic data by sparsifying and adding noise. Furthermore, our framework provides customizable pipelines for various ML experiments, such as transfer learning.
DILiS-lab/SimbaML’s past year of commit activity - pmotif_analytics Public Forked from timgarrels/MA_analytics
Collection of tools to run analyses based on the pmotif_lib py-package
DILiS-lab/pmotif_analytics’s past year of commit activity - pmotif_lib Public Forked from timgarrels/pmotif_lib
Perform motif detection, either with traditional frequency, or with positional metrics for each graphlet occurrence.
DILiS-lab/pmotif_lib’s past year of commit activity
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