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| #TODO rewrite | ||
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| # Importer source code | ||
| * [GMQLImporter](https://github.com/DEIB-GECO/GMQL-Importer/tree/master/src/main/scala/it/polimi/genomics/importer/GMQLImporter) contains the base components for defining the required implementation to correctly run download, transformation and loading of datasets. Correctness of the configuration files is also managed here. | ||
| * [FileDatabase](https://github.com/DEIB-GECO/GMQL-Importer/tree/master/src/main/scala/it/polimi/genomics/importer/FileDatabase) records and manages the status of downloaded, transformed and loaded files, tracking their history and checking their correctness. | ||
| * [DefaultImporter](https://github.com/DEIB-GECO/GMQL-Importer/tree/master/src/main/scala/it/polimi/genomics/importer/DefaultImporter) includes basic examples of downloaders and transformers. | ||
| * [ENCODEImporter](https://github.com/DEIB-GECO/GMQL-Importer/tree/master/src/main/scala/it/polimi/genomics/importer/ENCODEImporter) specific implementation for integrating ENCODE's datasets. | ||
| * [CistromeImporter](https://github.com/DEIB-GECO/GMQL-Importer/tree/master/src/main/scala/it/polimi/genomics/importer/CistromeImporter) project for integration of Cistrome's datasets into GMQL. | ||
| * [main](https://github.com/DEIB-GECO/GMQL-Importer/tree/master/src/main/scala/it/polimi/genomics/importer/main) console application for user interface. | ||
| # Source code package | ||
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| * [database](./database) contains a module that records and manages the status of the files for each level, tracks the history of the previous execution of the system. | ||
| * [step](./step) contains the base components for defining the required implementation to correctly run each step. The configuration XML related files are also available in this folder | ||
| * [downloader_transformer](./downloader_transformer) includes basic examples of _Downloader_ and _Transformer_ classes and also specific implementation for different data sources. | ||
| * [cleaner](./cleaner) contains the cleaner module's source codes | ||
| * [mapper](./mapper) contains the mapper module's source codes |