anaconda environment not correctly activated on cluster nodes #1

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1. KirstensGitHub commented on Oct 21, 2016

   

   KirstensGitHub

   on Oct 21, 2016

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   didn't @jakerost do this successfully?
2. jeremymanning commented on Oct 21, 2016

   

   jeremymanning

   on Oct 21, 2016

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   the error i'm getting is that on the head node (the one we ssh into to submit jobs, interact with data, run test scripts, etc.), i can run "source activate <my_virtual_environment>" and then all of the modules that i've installed (e.g. the brain dynamics model) are available. it seems like on the compute nodes (the ones that actually run the jobs), even though i'm pretty sure they share a filesystem, the installed modules don't seem to be available.

   😕React with 😕1Reacted by Jeremy R. Manning
3. jeremymanning

   added a commit that references this issue on Aug 13, 2019

   Merge pull request #1 from ContextLab/eventseg

   ...

   c094e57
4. paxtonfitzpatrick commented on Jan 14, 2020

   

   paxtonfitzpatrick

   on Jan 14, 2020

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   module load xxx and <source/conda> activate yyy need to be explicitly called in bash scripts. Has been fixed
5. paxtonfitzpatrick

   closed this as completedon Jan 14, 2020