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update readme
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tkik committed Jul 24, 2024
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Expand Up @@ -78,7 +78,7 @@ The example data of the methrix package is used.

```r
#Example bedgraph files
> bdg_files = list.files(path = system.file('extdata', package = 'methrix'), pattern = "*bdg\\.gz$", full.names = TRUE)
> bdg_files = list.files(path = system.file('extdata', package = 'methrix'), pattern = "*bedGraph\\.gz$", full.names = TRUE)

> meth = methrix::read_bedgraphs(files = bdg_files, ref_cpgs = hg19_cpgs, chr_idx = 1, start_idx = 2, M_idx = 3, U_idx = 4,
stranded = TRUE, collapse_strands = TRUE)
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