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1. gatk_pipeline gatk_pipeline Public

   Pipeline for processing raw fastq files through SNP calling with GATK and subsequent filtering

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2. WZA WZA Public

   A repository containing the analysis scripts and simulation configuration files to accompany our project on the Weighted-Z Analysis for GEA (WZA)

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3. varscan_pipeline varscan_pipeline Public

   Pipeline for CoAdapTree to autonomously process raw fastq files through SNP calling with VarScan and subsequent filtering following bioinformatic best practices.

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4. ConvergenceAnalysis ConvergenceAnalysis Public

   A repo containing the scripts to perform the convergence analysis on GEA results

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5. GEA GEA Public

   Single directory with links to all GEA efforts

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6. pypoolation pypoolation Public

   python scripts for population genetic statistics for data coming out of the varscan pipeline

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