Fix #73 - out format for multiindividuals decompose

Clinical-Genomics · Sep 26, 2024 · 3a9fb46 · 3a9fb46
1 parent a7fcd76
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -8,6 +8,7 @@ This project adheres to [Semantic Versioning](http://semver.org/).
 - Added a test for TRGT MCs set to `.`
 - Added CLI test for TRGT file
 - Fix codecov upload hidden artifact issue
+- Incorrect multisample, multiallele FORMAT output
 
 ## [0.9.1]
 ### Added

diff --git a/stranger/utils.py b/stranger/utils.py
@@ -382,11 +382,11 @@ def update_decomposed_variant_format_fields(variant_info, header_info, individua
     Update variant_info individual FORMAT fields with information found in the now up to date
     format_dicts.
     """
-    out_format = []
-
+
     individuals = [individual for individual in header_info[individual_index:]]
 
     for index, format_dict in enumerate(variant_info["format_dicts"]):
+        out_format = []
         for field in variant_info["FORMAT"].split(":"):
             out_format.append(format_dict[field])