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CharlesDexterW/README.md

Benjamin Garcés · Biochemist & Bioinformatician

I'm a Biochemistry Engineer based in Ambato, Ecuador, working at the intersection of wet lab biology and computational analysis. My work spans conservation genomics, molecular modeling, and science communication — with a focus on making biological data tell a clear story.

Currently a Research Assistant at Fundación Jambatu (Quito), where I work on threatened amphibian sperm cryopreservation and endocrine disruptor detection via HPLC-FD. Previously contributed to environmental quality analysis across Ecuador.


What I work on

Dry lab Wet lab
Python · R · Bash · Git PCR · HPLC · SDS-PAGE
Genomic sequence analysis Microbial & cancer cell culture
Molecular docking (Autodock Vina) Microscopy · Cryopreservation
Statistical modeling in R Cell transformation

Selected repositories

Statistical_Analysis_of_Frog_Sperm_Motility R-based statistical analysis of anuran sperm motility data — directly connected to active conservation work with threatened Ecuadorian frog species at Fundación Jambatu.

C.-elegans-miRNA-Sequence-Analysis-Pipeline Automated Bash pipeline for reproducible miRNA analysis from miRBase v22. Targets C. elegans lin-4/let-7 precursors using SeqKit for biochemical metric extraction.

Genomics_Data_Analysis_Portfolio Python workflows for gene information and chromosomal sequence analysis using the mouse genome (mm9 build). Demonstrates end-to-end genomic data handling.

TCA-genomics-MM9 Pipeline for analyzing TCA cycle enzyme sequences in the mm9 mouse genome — combining metabolic pathway biology with genomic sequence methods.


Publication

Freire, J. S., & Garcés, B. (2022). Preparation of a social engineering attack, from scratch to compromise: A USB dropper and impersonation approach. In Information and Communication Technologies (pp. 281–293). Springer International Publishing. → View on Springer


Certifications & training

  • MITx: Cell Biology, Quantitative Biology, Biochemistry, Genetics series (2023–2024)
  • Biochemical Society: R for Biochemists 101 & 201 (2023)
  • NCBI/NLM: Genome comparison, Primer-BLAST, PubChem (2023)
  • Erasmus University Rotterdam: Science Communication — Communicating Trustworthy Information (2024)
  • Six Sigma Green Belt · University System of Georgia / Coursera (2024)
  • 1st International Seminar of Advanced Bioinformatics · Bioinformatix Biolabs, India (2025)

Mentorship

Mentor at Synbio Bootcamp & Hackathon 5.0 and 6.0 (2025–2026) — reviewing written reports, evaluating synthetic biology projects, and supporting high school and university student teams across Latin America.


Let's connect

Open to research collaborations, science communication projects, and PhD opportunities in bioinformatics — particularly in Germany.

Pinned Loading

  1. atelopus-sperm-cryopreservation-analysis atelopus-sperm-cryopreservation-analysis Public

    Demonstrating data manipulation and statistical analysis abilities through curated datasets and code.

    HTML 1

  2. mm9-genomic-seq-analysis mm9-genomic-seq-analysis Public

    This Python script performs a detailed analysis of genomic sequence data, specifically focusing on gene information and chromosomal sequences from the mouse genome (mm9 build). It demonstrates fund…

    Python

  3. cel-mirna-seqkit-pipeline cel-mirna-seqkit-pipeline Public

    This is an automated Bash pipeline for reproducible miRNA analysis from miRBase v22. I used C. elegans (lin-4/let-7) precursors using SeqKit for biochemical metric extraction.

    Shell 1

  4. TCA-genomics-MM9 TCA-genomics-MM9 Public

    This pipeline aims to analyze the Cytric acid cicle enzimes of mm9

    Python 1

  5. BGC BGC Public

    Personal webpage and science communication portfolio of Benjamin Garcés — bioinformatician and science communicator. Bilingual (EN/ES). Covers conservation genomics, computational biology, and scie…

    HTML