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When reading the raw images from disk, we're reading single fields of view for a single region and timepoint, so we should not have to worry about images not fitting into memory, and we can cut out dask from this step. This both makes profiling easier and also in my testing cuts off about 1s from the 8x8 field of view benchmark I've been using (which is now down in the 10-11s range).

Tested by:

  • ./dev/run_tests.sh

When reading the raw images from disk, we're reading single fields of
view for a single region and timepoint, so we should not have to worry
about images not fitting into memory, and we can cut out dask from this
step. This both makes profiling easier and also in my testing cuts off
about 1s from the 8x8 field of view benchmark I've been using (which is
down down in the 10-11s range).

Tested by:
- `./dev/run_tests.sh`
@cjfuller cjfuller merged commit 0be14bb into main Jan 16, 2025
@cjfuller cjfuller deleted the colin/skimage_reader branch January 16, 2025 23:23
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2 participants