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drop sam support
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matthdsm authored Apr 21, 2021
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Expand Up @@ -56,11 +56,11 @@ There are three main stages (converting, reference creating and predicting) when
observe additional improvement concerning normalization.
- Predict copy number alterations (using the reference file and test .npz cases of interest)

### Stage (1) Convert aligned reads (sam/bam/cram) to .npz
### Stage (1) Convert aligned reads (bam/cram) to .npz

```bash

WisecondorX convert input.sam/bam/cram output.npz [--optional arguments]
WisecondorX convert input.bam/cram output.npz [--optional arguments]
```

<br>Optional argument <br><br> | Function
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