This repo provides a bash script for paired-end variant calling of NGS derived RNA-seq data. The pipeline is designed to work for SARS-CoV-2 Variant calling. It also contains an R script that is used to visualize the results. The script assumes you've de-novo assembled a genome which you've annotated using Prokka.
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This repo provides a bash script for paired-end variant calling of NGS derived RNA-seq data.
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Cameron-Nguyen1/SARS-CoV-2-VariantCallingPipe
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This repo provides a bash script for paired-end variant calling of NGS derived RNA-seq data.
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