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chore(deps): bump the dependencies group across 1 directory with 7 updates #257

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merged 3 commits into from
Jan 21, 2025

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@dependabot dependabot bot commented on behalf of github Jan 20, 2025

Bumps the dependencies group with 7 updates in the / directory:

Package From To
fhir-resources 7.1.0 8.0.0
psycopg[binary] 3.2.3 3.2.4
sqlalchemy 2.0.36 2.0.37
pydantic 2.10.3 2.10.5
pydantic-settings 2.7.0 2.7.1
numpy 2.2.0 2.2.2
setuptools 75.6.0 75.8.0

Updates fhir-resources from 7.1.0 to 8.0.0

Changelog

Sourced from fhir-resources's changelog.

8.0.0 (2024-12-25)

  • The minimum required version for fhir-core is 1.0.0, which obviously comes with new features and bug fixes. For example xml serialization/deserialization. See changes log here <https://github.com/nazrulworld/fhir-core/blob/1.0.0/HISTORY.rst#100-2024-12-25>_

  • Issue #168 nazrulworld/fhir.resources#166

8.0.0b4 (2024-10-24)

  • PR#160 <https://github.com/nazrulworld/fhir.resources/pull/160>_ switch the type of Element.id from id to string for R4B [cybernop]

8.0.0b3 (2024-10-10)

  • Minimum version of fhir-core package have been updated.
  • All of fhir resources are regenerated for to comply with the optionality of fhir model's field. Issue nazrulworld/fhir.resources#164

8.0.0b2 (2024-10-02)

  • Issue [#164](https://github.com/nazrulworld/fhir.resources/issues/164) <https://github.com/nazrulworld/fhir.resources/issues/164>_ get_fhir_model_class is now available and can be imported from base package. For example from fhir.resources import get_fhir_model_class or from fhir.resources.STU3 import get_fhir_model_class

8.0.0b1 (2024-08-05)

Breaking

  • Drop support for python 3.7

  • FHIR DTU2 packages are no longer available.

Commits
  • 2de36c7 Preparing release 8.0.0
  • 1115f8b ✨ setup py has been updated, including Manifest file.
  • fa483dc ✨ The minimum required version for fhir-core is 1.0.0
  • e2c8ca4 📝 updated readme
  • c5a8e5f Back to development: 8.0.0b5
  • 0380993 Preparing release 8.0.0b4
  • eeafae8 ✨ minimum fhir-core version requirement has been updated.
  • bd1b754 📝 documents are updater for PR #160
  • cb5b4c8 Merge pull request #160 from cybernop/fix/element-id
  • a309dff switch the type of Element.id from id to string for R4B
  • Additional commits viewable in compare view

Updates psycopg[binary] from 3.2.3 to 3.2.4

Changelog

Sourced from psycopg[binary]'s changelog.

.. currentmodule:: psycopg

.. index:: single: Release notes single: News

psycopg release notes

Future releases

Python 3.3.0 (unreleased) ^^^^^^^^^^^^^^^^^^^^^^^^^

  • Drop support for Python 3.8.

Current release

Psycopg 3.2.4 ^^^^^^^^^^^^^

  • Don't lose notifies received whilst the ~Connection.notifies() iterator is not running (:ticket:[#962](https://github.com/psycopg/psycopg/issues/962)).
  • Make sure that the notifies callback is called during the use of the ~Connection.notifies() generator (:ticket:[#972](https://github.com/psycopg/psycopg/issues/972)).
  • Raise the correct error returned by the database (such as !AdminShutdown or !IdleInTransactionSessionTimeout) instead of a generic OperationalError when a server error causes a client disconnection (:ticket:[#988](https://github.com/psycopg/psycopg/issues/988)).
  • Build macOS dependencies from sources instead using the Homebrew versions in order to avoid problems with MACOSX_DEPLOYMENT_TARGET (:ticket:[#858](https://github.com/psycopg/psycopg/issues/858)).
  • Bump libpq to 17.2 in Linux and macOS binary packages.
  • Bump libpq to 16.4 in Windows binary packages, using the vcpkg library__ (:ticket:[#966](https://github.com/psycopg/psycopg/issues/966)).

.. __: https://vcpkg.io/en/package/libpq

Psycopg 3.2.3 ^^^^^^^^^^^^^

  • Release binary packages including PostgreSQL 17 libpq (:ticket:[#852](https://github.com/psycopg/psycopg/issues/852)).

Psycopg 3.2.2 ^^^^^^^^^^^^^

... (truncated)

Commits
  • c2c4ba2 chore: bump psycopg package version to 3.2.4
  • d959f8d docs: mention the binary packages changes in news file
  • 730c23c chore(binary): bump libpq to 17.2
  • 5f9d196 chore(binary): bump OpenSSL to 3.4.0
  • e9188ed Merge branch 'build-libpq-macos-3.2' into maint-3.2
  • e19a258 ci(binary): less verbose libpq build
  • 89f3f82 ci(macos): drop Python 3.8 build on macOS arm64
  • bdba767 ci(macos): build libpq instead of using Homebrew libraries
  • 06ae213 refactor: don't keep the notifiers backlog handler in the connection state
  • 0f7005b Merge branch 'fix-clobbered-error-on-disconnect-3.2' into maint-3.2
  • Additional commits viewable in compare view

Updates sqlalchemy from 2.0.36 to 2.0.37

Release notes

Sourced from sqlalchemy's releases.

2.0.37

Released: January 9, 2025

orm

  • [orm] [bug] Fixed issue regarding Union types that would be present in the _orm.registry.type_annotation_map of a _orm.registry or declarative base class, where a Mapped element that included one of the subtypes present in that Union would be matched to that entry, potentially ignoring other entries that matched exactly. The correct behavior now takes place such that an entry should only match in _orm.registry.type_annotation_map exactly, as a Union type is a self-contained type. For example, an attribute with Mapped[float] would previously match to a _orm.registry.type_annotation_map entry Union[float, Decimal]; this will no longer match and will now only match to an entry that states float. Pull request courtesy Frazer McLean.

    References: #11370

  • [orm] [bug] Fixed bug in how type unions were handled within _orm.registry.type_annotation_map as well as _orm.Mapped that made the lookup behavior of a | b different from that of Union[a, b].

    References: #11944

  • [orm] [bug] Consistently handle TypeAliasType (defined in PEP 695) obtained with the type X = int syntax introduced in python 3.12. Now in all cases one such alias must be explicitly added to the type map for it to be usable inside Mapped. This change also revises the approach added in #11305, now requiring the TypeAliasType to be added to the type map. Documentation on how unions and type alias types are handled by SQLAlchemy has been added in the orm_declarative_mapped_column_type_map section of the documentation.

    References: #11955

  • [orm] [bug] Fixed regression caused by an internal code change in response to recent Mypy releases that caused the very unusual case of a list of ORM-mapped attribute expressions passed to ColumnOperators.in_() to no longer be accepted.

    References: #12019

  • [orm] [bug] Fixed issues in type handling within the _orm.registry.type_annotation_map feature which prevented the use of unions, using either pep-604 or Union syntaxes under future

... (truncated)

Commits

Updates pydantic from 2.10.3 to 2.10.5

Release notes

Sourced from pydantic's releases.

v2.10.5 2024-12-18

v2.10.5 (2025-01-08)

What's Changed

v2.10.4 2024-12-18

What's Changed

Packaging

Fixes

New Contributors

Full Changelog: pydantic/pydantic@v2.10.3...v2.10.4

Changelog

Sourced from pydantic's changelog.

v2.10.5 (2025-01-08)

GitHub release

What's Changed

v2.10.4 (2024-12-18)

GitHub release

What's Changed

Packaging

Fixes

New Contributors

Commits

Updates pydantic-settings from 2.7.0 to 2.7.1

Release notes

Sourced from pydantic-settings's releases.

v2.7.1

What's Changed

Full Changelog: pydantic/pydantic-settings@v2.7.0...v2.7.1

Commits

Updates numpy from 2.2.0 to 2.2.2

Release notes

Sourced from numpy's releases.

2.2.2 (Jan 18, 2025)

NumPy 2.2.2 Release Notes

NumPy 2.2.2 is a patch release that fixes bugs found after the 2.2.1 release. The number of typing fixes/updates is notable. This release supports Python versions 3.10-3.13.

Contributors

A total of 8 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Alicia Boya García +
  • Charles Harris
  • Joren Hammudoglu
  • Kai Germaschewski +
  • Nathan Goldbaum
  • PTUsumit +
  • Rohit Goswami
  • Sebastian Berg

Pull requests merged

A total of 16 pull requests were merged for this release.

  • #28050: MAINT: Prepare 2.2.x for further development
  • #28055: TYP: fix void arrays not accepting str keys in __setitem__
  • #28066: TYP: fix unnecessarily broad integer binop return types (#28065)
  • #28112: TYP: Better ndarray binop return types for float64 &...
  • #28113: TYP: Return the correct bool from issubdtype
  • #28114: TYP: Always accept date[time] in the datetime64 constructor
  • #28120: BUG: Fix auxdata initialization in ufunc slow path
  • #28131: BUG: move reduction initialization to ufunc initialization
  • #28132: TYP: Fix interp to accept and return scalars
  • #28137: BUG: call PyType_Ready in f2py to avoid data races
  • #28145: BUG: remove unnecessary call to PyArray_UpdateFlags
  • #28160: BUG: Avoid data race in PyArray_CheckFromAny_int
  • #28175: BUG: Fix f2py directives and --lower casing
  • #28176: TYP: Fix overlapping overloads issue in 2->1 ufuncs
  • #28177: TYP: preserve shape-type in ndarray.astype()
  • #28178: TYP: Fix missing and spurious top-level exports

Checksums

MD5

749cb2adf8043551aae22bbf0ed3130a  numpy-2.2.2-cp310-cp310-macosx_10_9_x86_64.whl
bc79fa2e44316b7ce9bacb48a993ed91  numpy-2.2.2-cp310-cp310-macosx_11_0_arm64.whl
c6b2caa2bbb645b5950dccb77efb1dbb  numpy-2.2.2-cp310-cp310-macosx_14_0_arm64.whl
8c410efac169af880cacbbac8a731658  numpy-2.2.2-cp310-cp310-macosx_14_0_x86_64.whl

... (truncated)

Commits
  • fd8a68e Merge pull request #28184 from charris/prepare-2.2.2
  • 0d106a5 REL: Prepare for the NumPy 2.2.2 release [wheel build]
  • dfdd35a Merge pull request #28175 from charris/backport-28056
  • e4517a8 Merge pull request #28176 from charris/backport-28168
  • 2c0432b Merge pull request #28178 from charris/backport-28170
  • 2230a08 Merge pull request #28177 from charris/backport-28169
  • b04e32c TYP: Fix missing and spurious top-level exports
  • 6a5f537 TYP: preserve shape-type in ndarray.astype()
  • f782790 TYP: Fix overlapping overloads issue in 2->1 ufuncs
  • a19acf1 BUG: Fix casing for f2py directives
  • Additional commits viewable in compare view

Updates setuptools from 75.6.0 to 75.8.0

Changelog

Sourced from setuptools's changelog.

v75.8.0

Features

  • Implemented Dynamic field for core metadata (as introduced in PEP 643). The existing implementation is currently experimental and the exact approach may change in future releases. (#4698)

v75.7.0

Features

Commits
  • 5c9d980 Bump version: 75.7.0 → 75.8.0
  • 72c4222 Avoid using Any in function
  • 1c61d47 Add news fragments for PEP 643
  • f285d01 Implement PEP 643 (Dynamic field for core metadata) (#4698)
  • a50f6e2 Fix _static.Dict.ior for Python 3.8
  • b055895 Add extra tests for static/dynamic metadata
  • 770b4fc Remove test workaround for unmarked static values from pyproject.toml
  • 8b22d73 Mark values from pyproject.toml as static
  • f699fd8 Fix spelling error
  • 8b4c8a3 Add tests for static 'attr' directive
  • Additional commits viewable in compare view

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…dates

Bumps the dependencies group with 7 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [fhir-resources](https://github.com/nazrulworld/fhir.resources) | `7.1.0` | `8.0.0` |
| [psycopg[binary]](https://github.com/psycopg/psycopg) | `3.2.3` | `3.2.4` |
| [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) | `2.0.36` | `2.0.37` |
| [pydantic](https://github.com/pydantic/pydantic) | `2.10.3` | `2.10.5` |
| [pydantic-settings](https://github.com/pydantic/pydantic-settings) | `2.7.0` | `2.7.1` |
| [numpy](https://github.com/numpy/numpy) | `2.2.0` | `2.2.2` |
| [setuptools](https://github.com/pypa/setuptools) | `75.6.0` | `75.8.0` |



Updates `fhir-resources` from 7.1.0 to 8.0.0
- [Release notes](https://github.com/nazrulworld/fhir.resources/releases)
- [Changelog](https://github.com/nazrulworld/fhir.resources/blob/main/HISTORY.rst)
- [Commits](nazrulworld/fhir.resources@7.1.0...8.0.0)

Updates `psycopg[binary]` from 3.2.3 to 3.2.4
- [Changelog](https://github.com/psycopg/psycopg/blob/master/docs/news.rst)
- [Commits](psycopg/psycopg@3.2.3...3.2.4)

Updates `sqlalchemy` from 2.0.36 to 2.0.37
- [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases)
- [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst)
- [Commits](https://github.com/sqlalchemy/sqlalchemy/commits)

Updates `pydantic` from 2.10.3 to 2.10.5
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.10.3...v2.10.5)

Updates `pydantic-settings` from 2.7.0 to 2.7.1
- [Release notes](https://github.com/pydantic/pydantic-settings/releases)
- [Commits](pydantic/pydantic-settings@v2.7.0...v2.7.1)

Updates `numpy` from 2.2.0 to 2.2.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.2.0...v2.2.2)

Updates `setuptools` from 75.6.0 to 75.8.0
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](pypa/setuptools@v75.6.0...v75.8.0)

---
updated-dependencies:
- dependency-name: fhir-resources
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: dependencies
- dependency-name: psycopg[binary]
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: sqlalchemy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: pydantic
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: pydantic-settings
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: setuptools
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jan 20, 2025
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codecov bot commented Jan 21, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 87.52%. Comparing base (545b151) to head (d8393a2).
Report is 4 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #257   +/-   ##
=======================================
  Coverage   87.52%   87.52%           
=======================================
  Files          92       92           
  Lines        5916     5916           
=======================================
  Hits         5178     5178           
  Misses        738      738           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@glichtner glichtner merged commit 0c61304 into main Jan 21, 2025
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@dependabot dependabot bot deleted the dependabot/pip/main/dependencies-59c0b4a247 branch January 21, 2025 12:12
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