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add kraken2 special rule into TPV#289

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martindemko wants to merge 1 commit intomainfrom
fix-kraken2-in-tpv
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add kraken2 special rule into TPV#289
martindemko wants to merge 1 commit intomainfrom
fix-kraken2-in-tpv

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@martindemko
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@martindemko martindemko commented Feb 26, 2026

Kraken2 has quite a big database in CVMFS's data.galaxproject.org, and for this it also needs a lot of memory.

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martenson commented Feb 26, 2026

this is how presumably .org is doing it

xref https://github.com/galaxyproject/usegalaxy-playbook/blob/c86d8844b8537077ffc22c03b7d90dcddd72fe86/env/common/templates/galaxy/config/tpv/tools.yaml.j2#L1088-L1129

.eu either does not do anything special or I can't find it

@martenson martenson changed the title adds kraken2 special rule into TPV add kraken2 special rule into TPV Feb 26, 2026
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That's actually just a slightly different version of what's in tpv-shared. I didn't want to repeat the same code just to specify different scheduling and context. In theory, I just need to access the latest value of mem and compare it to our max_mem (185 GB). But I didn't get valuable answer on matrix's tpv channel.

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