remove Mold2 from automated tests #74
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| name: Multi-OS Complete Test | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| - main | |
| pull_request: | |
| branches: | |
| - dev | |
| - main | |
| env: | |
| QSPPRED_TEST_EXTRAS: true | |
| QSPRPRED_VERBOSE_LOGGING: true | |
| jobs: | |
| tests-all: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 120 | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] # FIXME: add macos-latest and windows-latest (removed for now due to limited debugging options) | |
| python-version: [ '3.12' ] | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set Up Dependencies | |
| run: | | |
| python -m pip cache purge | |
| source .github/setup.sh ${{ runner.os }} $env | |
| - name: Check Environment Info | |
| run: | | |
| echo "Clustal Omega version: $(clustalo --version)" | |
| echo "MAFFT version: $(mafft --version)" | |
| python -m pip freeze | |
| python -c "print('Python version: ' + '$(python --version)')" | |
| python -c "import platform; print('System info: ', platform.system(), platform.release())" | |
| python -c "import qsprpred; print('QSPRpred version:', qsprpred.__version__)" | |
| - name: Run pytest | |
| run: cd testing/test_pytest && ./run.sh | |
| - name: Publish Test Report | |
| uses: mikepenz/action-junit-report@v4 | |
| if: success() || failure() # always run even if the previous step fails | |
| with: | |
| report_paths: 'testing/test_pytest/test_report.xml' | |
| - name: Test CLI | |
| run: cd testing/test_cli && ./run.sh | |
| - name: Test Consistency | |
| run: cd testing/test_consistency && ./run.sh | |
| - name: Test Tutorials | |
| run: cd testing/test_tutorial && ./run.sh |