Merge branch 'fix/pandas_tools' into 'dev' #67
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Multi-OS Complete Test | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| - main | |
| pull_request: | |
| branches: | |
| - dev | |
| - main | |
| env: | |
| QSPPRED_TEST_EXTRAS: true | |
| QSPRPRED_VERBOSE_LOGGING: true | |
| jobs: | |
| tests-all: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 120 | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] # FIXME: add macos-latest and windows-latest (removed for now due to limited debugging options) | |
| python-version: [ '3.12' ] | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set Up Dependencies | |
| run: | | |
| python -m pip cache purge | |
| source .github/setup.sh ${{ runner.os }} $env | |
| - name: Check Environment Info | |
| run: | | |
| echo "Clustal Omega version: $(clustalo --version)" | |
| echo "MAFFT version: $(mafft --version)" | |
| python -m pip freeze | |
| python -c "print('Python version: ' + '$(python --version)')" | |
| python -c "import platform; print('System info: ', platform.system(), platform.release())" | |
| python -c "import qsprpred; print('QSPRpred version:', qsprpred.__version__)" | |
| - name: Run pytest | |
| run: cd testing/test_pytest && ./run.sh | |
| - name: Publish Test Report | |
| uses: mikepenz/action-junit-report@v4 | |
| if: success() || failure() # always run even if the previous step fails | |
| with: | |
| report_paths: 'testing/test_pytest/test_report.xml' | |
| - name: Test CLI | |
| run: cd testing/test_cli && ./run.sh | |
| - name: Test Consistency | |
| run: cd testing/test_consistency && ./run.sh | |
| - name: Test Tutorials | |
| run: cd testing/test_tutorial && ./run.sh |