rename scaffold class names to be more descriptive #3

	name: Python3.10 CI with Basic Tests

	on:
	push:
	branches:
	- '**' # all branches
	- '!dev' # except dev
	- '!main' # except main
	- '!gh_pages' # except gh_pages

	env:
	QSPPRED_TEST_EXTRAS: false
	QSPRPRED_VERBOSE_LOGGING: true

	jobs:
	tests-basic:
	runs-on: ubuntu-latest
	timeout-minutes: 120
	defaults:
	run:
	shell: bash

	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'

	- name: Cache Python Environment
	uses: actions/cache@v3
	with:
	path: ${{ env.pythonLocation }}
	key: ${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('**/pyproject.toml') }}
	# restore-keys: \|
	# ${{ runner.os }}-pip-

	- name: Set Up Dependencies
	run: \|
	source .github/setup.sh ${{ runner.os }} $env

	- name: Check Environment Info
	run: \|
	echo "Clustal Omega version: $(clustalo --version)"
	echo "MAFFT version: $(mafft --version)"
	python -m pip freeze
	python -c "print('Python version: ' + '$(python --version)')"
	python -c "import platform; print('System info: ', platform.system(), platform.release())"
	python -c "import qsprpred; print('QSPRpred version:', qsprpred.__version__)"

	- name: Run pytest
	run: cd testing/test_pytest && ./run.sh

	- name: Publish Test Report
	uses: mikepenz/action-junit-report@v4
	if: success() \|\| failure() # always run even if the previous step fails
	with:
	report_paths: 'testing/test_pytest/test_report.xml'

	- name: Test CLI
	run: cd testing/test_cli && ./run.sh

	- name: Test Consistency
	run: cd testing/test_consistency && ./run.sh

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