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write fasta straight to Genbank file instead of merging with metadata first #195
Commits on Mar 19, 2024
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Jessica Rowell authored and Jessica Rowell committed
Mar 19, 2024 Configuration menu - View commit details
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remove the .1 from BS248355.1 in the BX248355.fasta headers and metadata
Jessica Rowell authored and Jessica Rowell committedMar 19, 2024 Configuration menu - View commit details
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make bakta config options the same
Jessica Rowell authored and Jessica Rowell committedMar 19, 2024 Configuration menu - View commit details
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change outputs from fasta_path.getSimpleNAme to meta.id
Jessica Rowell authored and Jessica Rowell committedMar 19, 2024 Configuration menu - View commit details
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Commits on Mar 20, 2024
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add option to skip plot and get rid of huge gap before bakta cmd b4 i…
…nput fasta
Jessica Rowell authored and Jessica Rowell committedMar 20, 2024 Configuration menu - View commit details
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Commits on Mar 22, 2024
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remove fx that merges fasta and metadata because it breaks on multico…
…ntig fasta files
Jessica Rowell authored and Jessica Rowell committedMar 22, 2024 Configuration menu - View commit details
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fix issue with bakta publish dir
Jessica Rowell authored and Jessica Rowell committedMar 22, 2024 Configuration menu - View commit details
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remove the annoying fasta not required print statement
Jessica Rowell authored and Jessica Rowell committedMar 22, 2024 Configuration menu - View commit details
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Commits on Mar 28, 2024
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copy the inpt fasta to submissions dir for direct use by Genbank tabl…
…e2asn instead of mergig with metadata and rewriting
Jessica Rowell authored and Jessica Rowell committedMar 28, 2024 Configuration menu - View commit details
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Commits on Mar 29, 2024
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add function to get locus tag from gff3 file
Jessica Rowell authored and Jessica Rowell committedMar 29, 2024 Configuration menu - View commit details
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