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write fasta straight to Genbank file instead of merging with metadata first #195

Merged
merged 10 commits into from
Apr 9, 2024
Merged

write fasta straight to Genbank file instead of merging with metadata first #195

merged 10 commits into from
Apr 9, 2024

Commits on Mar 19, 2024

  1. revert BX248355.fasta

    Jessica Rowell authored and Jessica Rowell committed Mar 19, 2024
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  2. remove the .1 from BS248355.1 in the BX248355.fasta headers and metadata

    Jessica Rowell authored and Jessica Rowell committed Mar 19, 2024
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  3. make bakta config options the same

    Jessica Rowell authored and Jessica Rowell committed Mar 19, 2024
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  4. change outputs from fasta_path.getSimpleNAme to meta.id

    Jessica Rowell authored and Jessica Rowell committed Mar 19, 2024
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Commits on Mar 20, 2024

  1. add option to skip plot and get rid of huge gap before bakta cmd b4 i… 

    …nput fasta
    Jessica Rowell authored and Jessica Rowell committed Mar 20, 2024
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Commits on Mar 22, 2024

  1. remove fx that merges fasta and metadata because it breaks on multico… 

    …ntig fasta files
    Jessica Rowell authored and Jessica Rowell committed Mar 22, 2024
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  2. fix issue with bakta publish dir

    Jessica Rowell authored and Jessica Rowell committed Mar 22, 2024
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  3. remove the annoying fasta not required print statement

    Jessica Rowell authored and Jessica Rowell committed Mar 22, 2024
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Commits on Mar 28, 2024

  1. copy the inpt fasta to submissions dir for direct use by Genbank tabl… 

    …e2asn instead of mergig with metadata and rewriting
    Jessica Rowell authored and Jessica Rowell committed Mar 28, 2024
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Commits on Mar 29, 2024

  1. add function to get locus tag from gff3 file

    Jessica Rowell authored and Jessica Rowell committed Mar 29, 2024
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