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change container from seqsender to tostadas #193

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merged 1 commit into from
Apr 5, 2024
Merged

change container from seqsender to tostadas #193

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change container from seqsender to tostadas
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Jessica Rowell authored and Jessica Rowell committed Apr 5, 2024
commit f64abae4c34c12e00e2df035d06fb67da4b1b2ff
2 changes: 1 addition & 1 deletion modules/local/initial_submission/main_full.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ process SUBMISSION_FULL {

conda (params.enable_conda ? params.env_yml : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'cdcgov/seqsender-dev' : 'cdcgov/seqsender-dev' }"
'staphb/tostadas:latest' : 'staphb/tostadas:latest' }"

input:
tuple val(meta), path(validated_meta_path), path(fasta_path), path(fastq_1), path(fastq_2), path(annotations_path)
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2 changes: 1 addition & 1 deletion modules/local/initial_submission/main_genbank.nf
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Expand Up @@ -11,7 +11,7 @@ process SUBMISSION_GENBANK {

conda (params.enable_conda ? params.env_yml : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'cdcgov/seqsender-dev' : 'cdcgov/seqsender-dev' }"
'staphb/tostadas:latest' : 'staphb/tostadas:latest' }"

input:
tuple val(meta), path(validated_meta_path), path(fasta_path), path(annotations_path)
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2 changes: 1 addition & 1 deletion modules/local/initial_submission/main_sra.nf
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Expand Up @@ -11,7 +11,7 @@ process SUBMISSION_SRA {

conda (params.enable_conda ? params.env_yml : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'cdcgov/seqsender-dev' : 'cdcgov/seqsender-dev' }"
'staphb/tostadas:latest' : 'staphb/tostadas:latest' }"

input:
tuple val(meta), path(validated_meta_path), path(fastq_1), path(fastq_2)
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