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Issues list

[Internal] [Bug] Make Title optional in submission code bug Something isn't working
#243 by jessicarowell was closed Jan 6, 2025 v4.1.0
1
@jessicarowell
[Internal] [Bug] Update submission function in py script not checking for GB flag bug Something isn't working
#242 by jessicarowell was closed Jan 6, 2025 v4.1.0
1
@jessicarowell
1
[Internal] [Bug] Mistake in metadata validation not allowing valid strings bug Something isn't working
#241 by jessicarowell was closed Jan 6, 2025 v4.1.0
1
@jessicarowell
2
[External] [Bug] Error when running a submission that does not require fasta file bug Something isn't working
#239 by Alan-Collins was closed Jan 2, 2025
1 task done
1
[Internal] [Bug] Submission code is not checking locally for report.xml bug Something isn't working
#237 by jessicarowell was closed Dec 18, 2024 v4.1.0
1
@jessicarowell
[Internal] [Bug] User config plugins will be ignored: nf-schema@2.1.1 and invalid input values bug Something isn't working
#234 by jessicarowell was closed Jan 11, 2025 v4.1.1
1
@RamiyapriyaS
1
[External] [Bug] Docker profile bug for submission bug Something isn't working
#233 by kyleoconnell was closed Dec 17, 2024
@kyleoconnell
1
[Internal] [Bug] "DataFrame columns are not unique" in BioSample bug Something isn't working
#230 by jessicarowell was closed Dec 18, 2024
1 task done
v4.1.0
1
@jessicarowell
1
Bug: Discrepancies in nextflow.config and test.config Files bug Something isn't working
#226 by RamiyapriyaS was closed Dec 16, 2024 v4.1.0
1
@RamiyapriyaS
[External] [Bug] Pandas 'host_age' KeyError in Test Profile bug Something isn't working
#225 by nrminor was closed Dec 12, 2024
1 of 3 tasks
1
[Internal] [Bug] Conda on Scicomp: Issue with cache clearing bug Something isn't working
#224 by RamiyapriyaS was closed Dec 16, 2024
1
@RamiyapriyaS
[Internal] [Bug] Change age to host_age in metadata template bug Something isn't working
#223 by jessicarowell was closed Nov 21, 2024
1 task done
v4.1.0
1
@jessicarowell
1
[Internal] [Bug] Vadr missing from conda profile bug Something isn't working
#222 by jessicarowell was closed Nov 22, 2024
1 task done
v4.1.0
@RamiyapriyaS
1
[Internal] [Bug] RepeatMasker GFF "IndexError: list index out of range" bug Something isn't working
#221 by RamiyapriyaS was closed Nov 18, 2024
@RamiyapriyaS
1
[Internal] [Feature] Incorporate AST and other optional bacteria BioSample attributes to submission.xml enhancement New feature or request
#219 by jessicarowell was closed Dec 18, 2024
1 task done
v4.1.0
1
@jessicarowell
[Internal] [Bug] Conda environment on scicomp: RepeatMasker::createLib(): Error bug Something isn't working
#216 by jessicarowell was closed Dec 16, 2024
1 task done
v4.1.0
1
@jessicarowell
[Internal] [Bug] GenBank folder not showing up in outdir/submission_outputs bug Something isn't working
#214 by jessicarowell was closed Nov 12, 2024
1 task done
1
@jessicarowell
1
[Internal] [Bug] Nextflow version 24.04.2 and nextflow.config tower configuration incompatibility bug Something isn't working
#210 by jessicarowell was closed Dec 12, 2024
1 task done
@jessicarowell
1
[Internal] [Feature] Change name of fastq files before SRA upload enhancement New feature or request
#209 by jessicarowell was closed Nov 6, 2024
1 task done
v3.0.0-beta
1
@jessicarowell
1
[Internal] [Feature] SRA Publication Delay Release enhancement New feature or request
#206 by jessicarowell was closed Nov 6, 2024
1 task done
1
1
[Internal] [Bug] New code not generating report.xml after submission bug Something isn't working
#205 by jessicarowell was closed Nov 5, 2024
1 task done
v4.0.0
1
@jessicarowell
1
[Internal] [Feature] Build submission process directly into pipeline enhancement New feature or request
#203 by jessicarowell was closed Nov 15, 2024
1 task done
v4.0.0
1
@jessicarowell
[External] [Bug] test fails at validation step bug Something isn't working
#201 by ammaraziz was closed Nov 21, 2024
1 task done
1
[External] [Feature] Clarify Conda Requirement enhancement New feature or request
#199 by garfinjm was closed Nov 8, 2024
1
[Internal] [Bug] fasta_path cannot be empty (sra-only submissions) bug Something isn't working
#191 by jessicarowell was closed Apr 10, 2024
1 task done
ProTip! Updated in the last three days: updated:>2025-01-13.