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Refactored Spike Contrast method #1

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merged 34 commits into from
Sep 15, 2020
Merged

Refactored Spike Contrast method #1

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1405966
faster mean_firing_rate for a typical use case (#331)
dizcza Jun 22, 2020
91c03c4
Timescale function option to return nan if there are few spikes (<=2)…
morales-gregorio Jun 30, 2020
dea2ec4
Build documentation in Travis (#335)
dizcza Jul 27, 2020
e55a6bf
Removed deprecation warnings from 0.7.0 (#306)
dizcza Jul 27, 2020
0779731
don't use nan
dizcza Aug 1, 2020
97482bc
don't pad with zeros
dizcza Aug 1, 2020
4b20fce
bin_shrink_factor parameter
dizcza Aug 1, 2020
89dcdae
precompute edges for _binning_half_overlap
dizcza Aug 1, 2020
352e8fb
deal with spiketrains of length 1
dizcza Aug 4, 2020
7548c0d
return trace optionally
dizcza Aug 4, 2020
9007517
ASSET optimized probability_matrix_analytical and looping in _jsf_uni…
dizcza Aug 5, 2020
9e67193
Naming convention (binsize -> bin_size, etc.) (#316)
dizcza Aug 7, 2020
fe7b86d
Release v0.8.0 (#340)
dizcza Aug 7, 2020
3abf36f
Merge branch 'master' into pr/spike_contrast
dizcza Aug 19, 2020
c41e06b
all quantities
dizcza Aug 19, 2020
277c8de
python2 issues
dizcza Aug 19, 2020
d56246c
python2 issues again
dizcza Aug 19, 2020
63b1f4c
Update acknowledgments.rst
mdenker Aug 28, 2020
4bd2703
added __all__ in elephant modules (#342)
dizcza Aug 31, 2020
82ffa0d
Added a warning in fanofactor function when the input spiketrains var…
dizcza Aug 31, 2020
9529f14
Merge commit 'refs/pull/338/head' of github.com:NeuralEnsemble/elepha…
dizcza Sep 1, 2020
a8aec14
fixed wrong default min_bin units
dizcza Sep 1, 2020
ff1c8a8
naming
dizcza Sep 1, 2020
0dc27b3
download & unzip API
dizcza Sep 1, 2020
af3f7fd
Feature/inhomogeneous gamma (#339)
pbouss Sep 1, 2020
e7448ea
Added information on citing Elephant to documentation, fixed bib entr…
mdenker Sep 7, 2020
9d869b2
Three surrogate methods: Trial-shifting, Bin Shuffling, ISI dithering…
pbouss Sep 7, 2020
6f342aa
SPADE: New way to count patterns for multiple testing (#347)
pbouss Sep 7, 2020
f932dea
spike synchrony doc; take the first 5 networks to run the test
dizcza Sep 7, 2020
ec1919a
renamed test module
dizcza Sep 7, 2020
352f419
group spike train correlation, dissimilarity, and synchrony
dizcza Sep 7, 2020
ed94d54
tutorials: changed wget to curl for platform compatibility (#350)
pbouss Sep 9, 2020
48fc9b0
Time-domain pairwise Granger causality (#332)
rjurkus Sep 10, 2020
f54e254
Merge branch 'master' into pr/spike_contrast
dizcza Sep 11, 2020
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group spike train correlation, dissimilarity, and synchrony
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@dizcza
dizcza committed Sep 7, 2020
commit 352f4196096add9ffa76329485d456d3c91119ba
9 changes: 6 additions & 3 deletions doc/modules.rst
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Expand Up @@ -20,12 +20,15 @@ Function Reference by Module
reference/signal_processing
reference/spade
reference/spectral
reference/spike_train_correlation
reference/spike_train_dissimilarity
reference/spike_train_generation
reference/spike_train_surrogates
reference/spike_train_synchrony
reference/sta
reference/statistics
reference/unitary_event_analysis
reference/waveform_features


.. toctree::
:maxdepth: 2

reference/_spike_train_processing
11 changes: 11 additions & 0 deletions doc/reference/_spike_train_processing.rst
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@@ -0,0 +1,11 @@
======================
Spike train processing
======================


.. toctree::
:maxdepth: 1

spike_train_correlation
spike_train_dissimilarity
spike_train_synchrony