Tools to work with manually generated and auto-segmented data in FAFB.
FAFBseg is on readthedocs.
pip3 install git+git://github.com/flyconnectome/fafbseg-py.git
To update an existing installation run this:
pip3 install git+git://github.com/flyconnectome/fafbseg-py.git --upgrade
You will need brainmaps API access. See brainmappy for details.
On top of that, you need to install below dependencies.
Make sure you have the most_recent version of the following libraries:
- pymaid:
pip3 install git+git://github.com/schlegelp/pymaid@master - brainmappy:
pip3 install git+git://github.com/schlegelp/brainmappy@master - inquirer:
pip3 install inquirer - iPython:
pip3 install ipython