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BostonGene / pyigmap Public

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Issues 18
Pull requests 2
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Configure ci/cd#136

Open

nsyzrantsev wants to merge 64 commits intomainBostonGene/pyigmap:mainfrom

add-ci-cdBostonGene/pyigmap:add-ci-cdCopy head branch name to clipboard

Conversation Commits64 (64)Checks Files changed

Open

Configure ci/cd#136
nsyzrantsev wants to merge 64 commits intomainfrom
add-ci-cd

Commits

Commits on Aug 9, 2025

Add ci/cd and port fastp on arm64
Nikita Syzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Update docker-multiarch.yml
nsyzrantsev
committed
Disable provenance and sbom for amd64 and arm64 stages
nsyzrantsev
committed
Remove type=ref,event=branch
nsyzrantsev
committed
Build if image version does not exist in ghcr
nsyzrantsev
committed
Fix runs-on image for build_arm64
nsyzrantsev
committed
Fix rule to build new images
nsyzrantsev
committed
Fix rule to build new images
nsyzrantsev
committed
Fix IMAGE_PREFIX
nsyzrantsev
committed
Apply lowercase for image uri
nsyzrantsev
committed
Build multi-arch vidjil and igblast
nsyzrantsev
committed
Build multi-arch vidjil and igblast
nsyzrantsev
committed
Update build cd config
nsyzrantsev
committed
Update build cd template
nsyzrantsev
committed
Update build cd template
nsyzrantsev
committed
Fix decide job outputs saving
nsyzrantsev
committed
Fix decide job outputs saving
nsyzrantsev
committed
Fix decide job outputs saving
nsyzrantsev
committed
Fix decide job outputs saving
nsyzrantsev
committed
Add additional logs
nsyzrantsev
committed
Fix build stages
nsyzrantsev
committed
Add matrix for all stages
nsyzrantsev
committed
Fix skipping logic
nsyzrantsev
committed
Fix skipping logic
nsyzrantsev
committed
Fix skipping logic
nsyzrantsev
committed
Reduce template
nsyzrantsev
committed
Replace downloader to fq-downloader
nsyzrantsev
committed
Build fq-downloader
nsyzrantsev
committed
Fix igblast Dockerfile
nsyzrantsev
committed
Build fastp:1.0.1-dev2
nsyzrantsev
committed
Fix bug with outputs savig in fastp and build fastp:1.0.1-dev3
nsyzrantsev
committed

Commits on Aug 10, 2025

Build ref images
nsyzrantsev
committed
Fix docker-multiarch.yml
nsyzrantsev
committed
Fix igblast-ref-builder and cdr3nt-error-corrector Dockerfiles
nsyzrantsev
committed
Update igblast-ref-builder Dockerfile
nsyzrantsev
committed
Update requirements.txt for cdr3nt-error-corrector
nsyzrantsev
committed
Fix igblast-ref-builder image
nsyzrantsev
committed
Fix igblast-ref-builder image
nsyzrantsev
committed
Optimize igblast-ref-builder image
nsyzrantsev
committed
Add optional_file to igblast-ref-builder image
nsyzrantsev
committed
Add cpio to igblast-ref-builder image
nsyzrantsev
committed
Update dependencies list for igblast-ref-builder
nsyzrantsev
committed

Commits on Feb 4, 2026

Merge branch 'main' into add-ci-cd

nsyzrantsev
and
claude
committed
Replace requirements.txt to pyproject.toml
nsyzrantsev
committed
Update testing configs
nsyzrantsev
committed
Reformat code, resolve lint and type errors
nsyzrantsev
committed
feat(ci): implement comprehensive CI/CD workflow with three-stage pipeline

nsyzrantsev
and
claude
committed
fix(ci): add component packages and reporter deps for type checking and unit tests

nsyzrantsev
and
claude
committed
fix(ci): add ffq dependency for fq-downloader type checking

nsyzrantsev
and
claude
committed
Format code
nsyzrantsev
committed
Update cdr3nt-error-corrector version
nsyzrantsev
committed
Update cd.yml
nsyzrantsev
committed
Update e2e.yml
nsyzrantsev
committed
Update cd.yml
nsyzrantsev
committed

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