The Bonham Lab at Tufts
Software for multi-'omics research
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- biobakery-nextflow Public
BonhamLab/biobakery-nextflow’s past year of commit activity - biobakery-containers Public
Container description files for docker and apptainer for biobakery tools
BonhamLab/biobakery-containers’s past year of commit activity - microbiome2function Public
A modular Python toolkit for mining UniProt protein data and converting it into machine-learning ready features. Handles everything from HUMAnN outputs to clean numerical representations (embeddings + multi-hot encodings) for downstream ML models. Features intelligent text cleaning, ESM-2 sequence embeddings, and GO/EC encoding.
BonhamLab/microbiome2function’s past year of commit activity - targene-pipeline Public Forked from TARGENE/targene-pipeline
Nextflow pipeline for Targeted-Learning of genetic effects
BonhamLab/targene-pipeline’s past year of commit activity
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