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Auto detect if imwrite should use ome and bigtiff or not

Status: Open.

#275 In BodenmillerGroup/steinbock;

· matt-sd-watson opened on Dec 13, 2024

Docker container keeps exiting

Status: Open.

#274 In BodenmillerGroup/steinbock;

· SamWell16 opened on Dec 11, 2024

Set mask dtype to np.uint32 by default without using ENV variables?

Status: Open.

#272 In BodenmillerGroup/steinbock;

· matt-sd-watson opened on Nov 20, 2024

Command "preprocess imc images" generate tiff file with only image for one channel

Status: Open.

#271 In BodenmillerGroup/steinbock;

· xwxdazhong opened on Nov 15, 2024

Strange invalid literal error..

bugSomething isn't workingSomething isn't working

Status: Open.

#259 In BodenmillerGroup/steinbock;

· paulrbuckley-kcl opened on May 9, 2024

[Bug]No neighborhood Data in h5ad-files?

duplicateThis issue or pull request already existsThis issue or pull request already exists

Status: Open.

#210 In BodenmillerGroup/steinbock;

· albert180 opened on Aug 9, 2023

tissuenet model support and documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#208 In BodenmillerGroup/steinbock;

· lassedochreden opened on Aug 3, 2023

Maximum amount of segmented cells bounded from segmentation output file format (16-bit unsigned integer TIFF images)

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#207 In BodenmillerGroup/steinbock;

· asom opened on Aug 2, 2023

Using the preprocess external option with large images

bugSomething isn't workingSomething isn't working

Status: Open.

#206 In BodenmillerGroup/steinbock;

· mjseignon opened on Jul 17, 2023

cytomarker panels

enhancementNew feature or requestNew feature or request

Status: Open.

#205 In BodenmillerGroup/steinbock;

· jwindhager opened on Jul 11, 2023

Add option to remove the first acquisition row in IMC images.

enhancementNew feature or requestNew feature or request

Status: Open.

#204 In BodenmillerGroup/steinbock;

· nathansteenbuck opened on Jul 11, 2023

--strict/--no-strict for steinbock preprocess imc images command

enhancementNew feature or requestNew feature or request

Status: Open.

#202 In BodenmillerGroup/steinbock;

· jwindhager opened on Jun 30, 2023