Bitbol-Lab
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ProtMamba-ssm
ProtMamba-ssm PublicProtMamba: a homology-aware but alignment-free protein state space model
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Iterative_masking
Iterative_masking PublicIterative masking algorithm on MSA Transformer to generate synthetic sequences
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Phylogeny-MSA-Transformer
Phylogeny-MSA-Transformer PublicSupporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
Repositories
- OutOfEquilibrium-ProtSeq Public
Bitbol-Lab/OutOfEquilibrium-ProtSeq’s past year of commit activity - rag-esm Public
Bitbol-Lab/rag-esm’s past year of commit activity - partial_sampling_spatially_structured_population Public
Repository for my lab immersion on spatially structured populations with partial updates.
Bitbol-Lab/partial_sampling_spatially_structured_population’s past year of commit activity - Phylogeny-MSA-Transformer Public
Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
Bitbol-Lab/Phylogeny-MSA-Transformer’s past year of commit activity - Phylogeny-ESM2 Public
Monte-Carlo generation of synthetic multiple sequence alignments along phylogenetic trees using a protein language model
Bitbol-Lab/Phylogeny-ESM2’s past year of commit activity - fitness-landscapes Public
Bitbol-Lab/fitness-landscapes’s past year of commit activity - DrugRes_StructPop Public
Repository for "Spatial structure facilitates evolutionary rescue by cost-free drug resistance" (2024) by C. Fruet, E. L. Müller, C. Loverdo, and A.-F. Bitbol.
Bitbol-Lab/DrugRes_StructPop’s past year of commit activity
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