Test data to be used for automated testing with the Bioinformatics-Munich pipelines

⚠️ Do not merge your test data to master! Each pipeline has a dedicated branch

Introduction

This repository contains various files for CI and unit testing of Bioinformatics-Munich pipelines and infrastructure and is built based on principles and contents from nf-core.

The principle for test data is as small as possible, as large as necessary.

Documentation

Bioinformatics-Munich/test-datasets comes with documentation in the docs/ directory, based on the one from nf-core:

1. Use an existing test dataset

Downloading test data

Due the potentially large number of large files in this repository for each pipeline, we highly recommend cloning only the branches you would use.

git clone <url> --single-branch --branch <pipeline/modules/branch_name>

To subsequently clone other branches¹

git remote set-branches --add origin [remote-branch]
git fetch

Support

For further information or help, don't hesitate to get in touch with us.

Footnotes

1. From stackoverflow ↩