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Description
Palomino4 had the following error during the 2021.06.14 bioc run:
bbs.jobs.processJobQueue> DONE JOB metaseqR2 (1064/2008) ON SLOT 8/16 after 465.97 seconds [retcode=1]^M
BBS> killing 40356^M
BBS> No such process 40356.^M
BBS> runJob(): C:\cygwin\bin\rsync.exe -rL metaseqR2.Rcheck /cygdrive/f/biocbuild/bbs-3.16-bioc/products-out/checksrc^M
BBS> pid = 9744 / time [] = 0.23 seconds / retcode = 0 / OK^M
The system cannot execute the specified program.^M
BBS> runJob(): C:\cygwin\bin\rsync.exe -rL metaseqR2.checksrc-out.txt /cygdrive/f/biocbuild/bbs-3.16-bioc/products-out/checksrc^M
Traceback (most recent call last):^M
File "F:\biocbuild\BBS\BBS-run.py", line 771, in <module>^M
STAGE4()^M
File "F:\biocbuild\BBS\BBS-run.py", line 635, in STAGE4^M
STAGE4_loop(job_queue, BBSvars.checksrc_nb_cpu, out_dir)^M
File "F:\biocbuild\BBS\BBS-run.py", line 605, in STAGE4_loop^M
bbs.jobs.processJobQueue(job_queue, nb_cpu,^M
File "F:\biocbuild\BBS\bbs\jobs.py", line 687, in processJobQueue^M
cumul += job.AfterRun()^M
File "F:\biocbuild\BBS\BBSbase.py", line 750, in AfterRun^M
self._MakeSummary()^M
File "F:\biocbuild\BBS\BBSbase.py", line 722, in _MakeSummary^M
self.pkgdumps.Push(self.out_dir)^M
File "F:\biocbuild\BBS\BBSbase.py", line 555, in Push^M
copy_the_damned_thing_no_matter_what(path, destdir)^M
File "F:\biocbuild\BBS\BBSbase.py", line 518, in copy_the_damned_thing_no_matter_what^M
bbs.jobs.tryHardToRunJob(cmd, nb_attempts=3, stdout=None,^M
File "F:\biocbuild\BBS\bbs\jobs.py", line 322, in tryHardToRunJob^M
retcode = runJob(cmd, stdout, maxtime, verbose)^M
File "F:\biocbuild\BBS\bbs\jobs.py", line 272, in runJob^M
proc = subprocess.Popen(cmd, stdout=out, stderr=subprocess.STDOUT, shell=True)^M
File "C:\Python39\lib\subprocess.py", line 951, in __init__^M
File "C:\Python39\lib\subprocess.py", line 1420, in _execute_child^M
PermissionError: [WinError 19] The media is write protected^M