-
Notifications
You must be signed in to change notification settings - Fork 17
Description
您好,我采用iseq下载SRR的单细胞数据原始文件,iseq -i SRR30758558 -g -d sra,但是中途好像报错,提示未能成功下载,下载的文件也是未完全压缩,程序代码提示如下:
Note: SRR30758558.metadata.tsv exists, skip downloading metadata for SRR30758558
SRR30758558_1.fastq.gz 8.80G SRR30758558_2.fastq.gz 25.87G
Note: Above Run will be downloaded. You can see the details in SRR30758558.metadata.tsv
Note: SRR30758558 FASTQ file is also not available in the ENA database, switch to download SRA file
Note: SRA database used, will download SRA file and convert to FASTQ file in gzip format
File size: Database: SRA Mode: https
SRR30758558 100%[=========================================>] 28.08G 11.8MB/s 用时 45m 56s
Note: No matching FASTQ files found for SRR30758558
Note: SRR30758558 FASTQ file is also not available in the ENA database, switch to download SRA file
Note: SRA database used, will download SRA file and convert to FASTQ file in gzip format
File size: Database: SRA Mode: https
Note: No matching FASTQ files found for SRR30758558
Note: SRR30758558 FASTQ file is also not available in the ENA database, switch to download SRA file
Note: SRA database used, will download SRA file and convert to FASTQ file in gzip format
File size: Database: SRA Mode: https
Note: No matching FASTQ files found for SRR30758558
SRR30758558 failed: no FASTQ files after retry, saving to fail.log
Note: Converting SRR30758558 to fastq files using 8 threads
join :|-------------------------------------------------- 100%
concat :|-------------------------------------------------- 100%
spots read : 510,973,899
reads read : 1,021,947,798
reads written : 1,021,947,798
Note: Compressing SRR30758558_1.fastq to SRR30758558_1.fastq.gz using 8 threads, may take a while
Note: Compressing SRR30758558_2.fastq to SRR30758558_2.fastq.gz using 8 threads, may take a while
^C======================================SRR30758558 download finished======================================
总是会提醒没有匹配的FASTQ文件?不明白是什么原因,用同样的代码下载另一个SRR13176241也出现同样的问题,麻烦请问是什么原因?谢谢!