BioComputingUP / ring-pymol Public

This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 37 Commits
GUIs		GUIs
.gitignore		.gitignore
README.md		README.md
__init__.py		__init__.py
correlation_window.py		correlation_window.py
frequency_window.py		frequency_window.py
main_window.py		main_window.py
rmsd_clustering.py		rmsd_clustering.py
utilities.py		utilities.py

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How to install

First install dependencies
- sudo apt-get install git build-essential python3-dev libglew-dev libpng-dev libfreetype6-dev libxml2-dev libmsgpack-dev python3-pyqt5.qtopengl libglm-dev libnetcdf-dev
Install conda, follow the instructions on their website
Create a new environment and switch to it
- conda crete -n myenv
- conda activate myenv
Install pymol in the new environment
- conda install -c schrodinger pymol
Install python dependencies for the plugin
- conda install networkx numpy scipy seaborn pandas
Open pymol and go to Plugin > Plugin Manager > Settings
- Add a new directory (/home/user/.pymol/startup)
Copy the plugin folder in the specified directory
Restart Pymol
The plugin should be showing on the Plugin menu of Pymol