Collection of awesome LLM apps with AI Agents and RAG using OpenAI, Anthropic, Gemini and opensource models.

DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models

Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning

Antibody Numbering and Antigen Receptor ClassIfication

MetaBolt: Lightning fast & automated metagenomic pipeline powered by Nextflow

Langflow is a powerful tool for building and deploying AI-powered agents and workflows.

Drug Target Interaction Prediction Using Protein Binding Sites And Drug Fragments

A generative model for programmable protein design

Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

All Algorithms implemented in Python

Machine learning-driven antibody design

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

Public repository describing training and testing of AntiBERTa.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

MMseqs2: ultra fast and sensitive search and clustering suite

Multi-task and masked language model-based protein sequence embedding models.

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

This R package provides an SDK to the Open AI API

A Code-First Introduction to NLP course

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Making Protein Design accessible to all via Google Colab!

Making Protein Design accessible to all via Google Colab!

Retrieved Sequence Augmentation for Protein Representation Learning

Generative Language Modeling for Antibody Design

DeepAAI

DeepAAI