Unknown error uisng test data-set

[kazumaxneo]

Hello.

I want to use EquiPNAS to check my TF bing sites (picked up from RNA seq experiment).
After creating the environment with conda, I downloaded the published models and tested the operation.
However, anknown error occurred.
Is there any solution?

git clone https://github.com/Bhattacharya-Lab/EquiPNAS.git
cd EquiPNAS/
mamba env create -f EquiPNAS_env.yml
conda activate EquiPNAS

Python version 3.10.4

$ python EquiPNAS.py --model_state_dict models/EquiPNAS-RNA/E-l12-768.pt --indir Preprocessing/ --outdir output/

---

•                        EquiPNAS                                          *
  

•       Improved protein-nucleic binding site prediction                   *
  

• using pretrained protein language model and equivariant deep graph learning *

•     For comments, please email to dbhattacharya@vt.edu                   *
  

---

Residie-level predictions for each target is being saved at output//

Traceback (most recent call last):
File "/home/kazu/Documents/EquiPNAS/EquiPNAS.py", line 155, in
main(PARS)
File "/home/kazu/Documents/EquiPNAS/EquiPNAS.py", line 92, in main
model.load_state_dict(torch.load(PARS.model_state_dict, map_location=device))
UnboundLocalError: local variable 'model' referenced before assignment
(EquiPNAS) kazu@kazu:~/Documents/EquiPNAS$

[rahmatullah-roche]

From your output error:

File "/home/kazu/Documents/EquiPNAS/EquiPNAS.py", line 92, in main
model.load_state_dict(torch.load(PARS.model_state_dict, map_location=device))

However, line 92 of EquiPNAS.py in the main function is:

inference_loader = GraphDataLoader(dataset, batch_size=1, shuffle=False)

which is different from what you reported. Have you changed EquiPNAS.py? If so, these changes might be causing the error. Please try using the original EquiPNAS.py.

Please closely follow the installation and usage instructions