This pipeline contains various Python scripts and a Powershell script used to analize and BLAST short-read sequences derived from complexity-reduced genotyping (DArTseq data).
This pipeline requires
ncbi-blast-2.8.0-alpha or latest; circos-0.69-6 or latest; Python 3.6 or latest; Powershell for Windows
Cite as Berenice Talamantes-Becerra, & Jason Carling. (2020, April 11). Currito3.1 DNA Fragment Analysis Software (Version V1.0.0). Zenodo. http://doi.org/10.5281/zenodo.3748447
Reference
Talamantes-Becerra B, Carling J, Kennedy K, Gahan M, Georges A. Identification of bacterial isolates from a public hospital in australia using complexity-reduced genotyping. J Microbiol Methods. 2019;160:11–9. doi:10.1016/j.mimet.2019.03.016.