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1. MAESTRO MAESTRO Public

   Forked from liulab-dfci/MAESTRO

   Single-cell Transcriptome and Regulome Analysis Pipeline

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2. TAR-scRNA-seq TAR-scRNA-seq Public

   Forked from fw262/TAR-scRNA-seq

   scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data

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3. scg_lib_structs scg_lib_structs Public

   Forked from Teichlab/scg_lib_structs

   Collections of library structure and sequence of popular single cell genomic methods

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4. scATAC-pro scATAC-pro Public

   Forked from tanlabcode/scATAC-pro

   A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

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5. chromothripsis-gene-amp-cancer chromothripsis-gene-amp-cancer Public

   Forked from sfbrunner/chromothripsis-gene-amp-cancer

   Code associated with publication "Chromothripsis drives the evolution of gene amplification in cancer"

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6. Alleloscope Alleloscope Public

   Forked from seasoncloud/Alleloscope

   Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows …

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