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Commits on Mar 6, 2025

• replaced bio.applications in checkData

  trvinh

  committed
  32aba20

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Commits on Feb 13, 2025

• replaced pkg_resources by importlib.metadata

  trvinh

  committed
  a0900cd

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• version bump

  trvinh

  committed
  fadabb7

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Commits on Dec 9, 2024

• moved demo data from uni to dropbox

  trvinh

  committed
  1b7b930

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Commits on Nov 12, 2024

• replace distDeviation by candidateScoreFactor

  trvinh

  committed
  ed93866

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Commits on Oct 28, 2024

• mergeOutput accepts .forward.domains

  trvinh

  committed
  26f2178

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Commits on Jun 6, 2024

• check duplicated ids in mergeOutput for fasta files

  trvinh

  committed
  e9340cf

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Commits on Jun 3, 2024

• added option to use user-defined annotool file

  trvinh

  committed
  3893e66

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Commits on Mar 14, 2024

• fixed mergeOutput

  trvinh

  committed
  a601990

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Commits on Mar 12, 2024

• fixed mergeOutput for domains files

  trvinh

  committed
  359e739

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Commits on Feb 28, 2024

• fixed bug identical geneIDs btw search and refspec

  trvinh

  committed
  1b4a778

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Commits on Feb 12, 2024

• fixed search taxa list when using --coreTaxa

  trvinh

  committed
  91edb37

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Commits on Dec 20, 2023

• option to validate hmm hits by sequence score

  trvinh

  committed
  0404231

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Commits on Dec 14, 2023

• fixed bug identical geneIDs btw search and refspec

  trvinh

  committed
  26bba47

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Commits on Sep 19, 2023

• deactivate fas config output

  trvinh

  committed
  959e0a0

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Commits on Aug 16, 2023

• check valid rank for refspec only

  trvinh

  committed
  5ccf824

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• option to not added all taxa

  trvinh

  committed
  eb902a6

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• changed orthID NA to fdogMA for manually added taxa

  trvinh

  committed
  e6ce3d1

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• added all searchTaxa to phyloprofile

  trvinh

  committed
  5cb0946

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Commits on Aug 15, 2023

• added check for invalid min-/maxDist; works with fasta36.3.8g

  trvinh

  committed
  c756ab0

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• added check for invalid min-/maxDist; works with fasta36.3.8g

  trvinh

  committed
  a746c8f

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Commits on Jul 18, 2023

• added warning for no hmm hit

  trvinh

  committed
  48372cf

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Commits on Jun 15, 2023

• set seqlen limit for muscle5

  trvinh

  committed
  a8541f8

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Commits on Jun 12, 2023

• fixed mapping file for addTaxon

  trvinh

  committed
  b06b3a1

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Commits on May 25, 2023

• fixed output filename for muscle5

  trvinh

  committed
  c5ca07c

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Commits on May 11, 2023

• check empty tmp dir before deleting in addTaxon

  trvinh

  committed
  b014157

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Commits on Mar 10, 2023

• muscle5,checkBlast,ignoreAnnoCheck

  trvinh

  committed
  052cf70

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Commits on Feb 22, 2023

• adapt evalue

  trvinh

  committed
  7e6bfbc

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Commits on Feb 20, 2023

• rename log fdogs.run

  trvinh

  committed
  7798d15

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Commits on Feb 17, 2023

• fix number of hmmhits core compilation

  trvinh

  committed
  03c9038

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Commits on Feb 14, 2023

• fix sorting hmm hits

  trvinh

  committed
  5785980

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Commits on Feb 6, 2023

• add several options to work with data paths; resolves: #28

  trvinh

  committed
  bb185a3

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• add several options to work with data paths

  trvinh

  committed
  7c3191a

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Commits on Feb 2, 2023

• v0.1.5 version bump

  trvinh

  committed
  ad8741d

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• sort hmm hits using domain scores; correct tree walking; setup force not delete data; correct profile output with fasOff

  trvinh

  committed
  206def0

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