adipo_deconv

Code for the preprint "A small fraction of progenitors differentiate into mature adipocytes due to constraints on the cell structure change"

Setting up the docker environment

The analysis was run on a docker image based on the the latest rocker/verse. Other R packages were added to the image and were made available as an image that can be obtained and launched on any local machine running docker.

$ docker pull bcmslab/adipo_deconv:latest
$ docker run -it bcmslab/adipo_deconv:latest bash

Obtaining the source code

The source code is hosted publicly on this repository in the form of a research compendium. This includes the scripts to reproduce the figures and tables in this manuscript.

$ git clone https://github.com/BCMSLab/adipo_deconv

Runing the analysis

In the directory adipo_deconv,

• Run scripts/initial_analysis.R to reproduce the analysis
• Knit the adipo_deconv.Rmd to reproduce the figures and tables in the manuscript

$ cd adipo_deconv
$ Rscript scripts/initial_analysis.R
$ Rscript -e "knit::knit('adipo_deconv.Rmd')"

Details of the R environment

The version of R that was used to perform this analysis is the 4.02 (2020-06-22) on x86\_64-pc-linux-gnu.

More

This manuscript was released as a preprint under the title A small fraction of progenitors differentiate into mature adipocytes due to constraints on the cell structure change