Split mlst and qc outputs into separate channels (#8)

BCCDC-PHL · May 12, 2022 · 77c7c17 · 77c7c17
1 parent e83fcbe
commit 77c7c17
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/main.nf b/main.nf
@@ -29,5 +29,5 @@ workflow {
 
       kma_result_to_mlst(kma_align.out.combine(ch_scheme))
 
-      count_called_alleles(kma_result_to_mlst.out)
+      count_called_alleles(kma_result_to_mlst.out.mlst)
 }
diff --git a/modules/kma_result_to_mlst.nf b/modules/kma_result_to_mlst.nf
@@ -9,7 +9,8 @@ process kma_result_to_mlst {
     tuple val(sample_id), path(kma_result), val(scheme)
 
     output:
-    tuple val(sample_id), path("${sample_id}_cgmlst.csv"), path("${sample_id}_locus_qc.csv")
+    tuple val(sample_id), path("${sample_id}_cgmlst.csv"), emit: mlst
+    tuple val(sample_id), path("${sample_id}_locus_qc.csv"), emit: mlst_qc
 
     script:
     """