Merge pull request #62 from AuReMe/m2m_fix_host_issue #206
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches: [ main ] | |
| paths-ignore: | |
| - 'article_data/**' | |
| - 'docs/**' | |
| - 'README.md' | |
| - 'CHANGELOG.md' | |
| - '.readthedocs.yml' | |
| - 'recipes/**' | |
| - 'tutorials/**' | |
| - 'external_dependencies/**' | |
| pull_request: | |
| branches: [ main ] | |
| paths-ignore: | |
| - 'article_data/**' | |
| - 'docs/**' | |
| - 'README.md' | |
| - 'CHANGELOG.md' | |
| - '.readthedocs.yml' | |
| - 'recipes/**' | |
| - 'tutorials/**' | |
| - 'external_dependencies/**' | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: [3.8, 3.9] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install graphviz | |
| pip install -r requirements.txt | |
| #- name: Lint with flake8 | |
| #run: | | |
| #pip install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| #flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| #flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Prepare environment | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install . | |
| python -c 'from ete3 import NCBITaxa; ncbi = NCBITaxa()' | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest | |
| cd test | |
| pytest test_m2m_addedvalue.py | |
| pytest test_m2m_analysis.py | |
| pytest test_m2m_cscope.py | |
| pytest test_m2m_iscope.py | |
| pytest test_m2m_metacom.py | |
| pytest test_m2m_mincom.py | |
| pytest test_tiny_toy_metacom.py |