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Commits on Mar 8, 2019

• Don't break people's names across (source file) lines

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Commits on Feb 20, 2019

• Check for gzopen() failure and print error messages

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Commits on Oct 25, 2018

• Widen tview "goto position" text entry box

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Commits on Jul 5, 2018

• Add missing Makefile dependencies

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Commits on May 22, 2018

• Fix --version when built from a Git repository (PR samtools#844)

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Commits on Aug 6, 2017

• Add optional QNAME column to mpileup text output

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Commits on Jan 17, 2017

• Add the autoconf macros required to the repository

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Commits on Jan 9, 2017

• Listen to -o FILE option in samtools view -c

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Commits on Jan 5, 2017

• Happy New Year

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Commits on Oct 21, 2016

• Skip usage tests when pseudo-terminal can't be opened

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Commits on Oct 10, 2016

• Improve view -s documentation

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Commits on Aug 22, 2016

• Use print_error_errno() to report file open failures

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Commits on Aug 3, 2016

• Fix language misidentification of test data [minor]

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Commits on Jul 18, 2016

• Exterminate error(), fix memory leaks in event of write errors

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Commits on Jun 21, 2016

• In read_file_list(), check for URL syntax or extant files

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Commits on Jun 13, 2016

• Avoid strndup() and strsep() for portability reasons

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Commits on Jun 2, 2016

• Avoid printing "error message: Success" [minor]

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• Use print_error/_errno() in bam_sort.c and bam_split.c

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• Add libst.a so test suite can use print_error()/etc

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• Allow finer control over program vs. script installation

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Commits on May 26, 2016

• Testclean and ignore test temporary files

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Commits on May 25, 2016

• Merge mpileup/depth -a/-aa fixes (PR samtools#579, PR samtools#586)

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• Fix Rob and Martin's whitespace [minor]

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Commits on May 20, 2016

• Add NEWS item about mpileup zero coverage '*' fixes

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• Merge sort memory requirement diagnostic (PR samtools#581)

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Commits on May 11, 2016

• Use bcf_hdr_format() rather than deprecated bcf_hdr_fmt_text()

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Commits on May 10, 2016

• Write BQ SAM line the same way as for AF

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Commits on May 6, 2016

• Explicitly set @CURSES_LIB@ for --without-curses

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Commits on Apr 26, 2016

• Use HTSlib's new errmod_cal()/probaln_glocal()/sam_prob_realn() functions

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• Use HTSlib's new probaln_glocal() function

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• Use HTSlib's new sam_prob_realn() and sam_cap_mapq() functions

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Commits on Apr 25, 2016

• HTSlib now provides errmod_cal() etc

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Commits on Apr 22, 2016

• Merge version number bump and NEWS file from master

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• Samtools release 1.3.1: bug fixes, notably sort temporary file fixes

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• Write sort's temporary files alongside the *output* file

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