rebuilding docs for v2.9.2

Ashastry2 · Jul 24, 2023 · 35d4d15 · 35d4d15
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diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -99,6 +99,7 @@ reference:
   - runScranSNN
   - runSeuratFindClusters
   - runKMeans
+  - runClusterSummaryMetrics
 - title: "Differential Expression"
 - contents:
   - runDEAnalysis

diff --git a/docs/articles/01_import_and_qc_tutorial.html b/docs/articles/01_import_and_qc_tutorial.html
diff --git a/docs/articles/01_import_and_qc_tutorial_files/figure-html/plotPerCellQC-1.png b/docs/articles/01_import_and_qc_tutorial_files/figure-html/plotPerCellQC-1.png
diff --git a/docs/articles/01_import_and_qc_tutorial_files/figure-html/plotScDblFinder-1.png b/docs/articles/01_import_and_qc_tutorial_files/figure-html/plotScDblFinder-1.png
diff --git a/docs/articles/01_import_and_qc_tutorial_files/figure-html/plottDecontX-1.png b/docs/articles/01_import_and_qc_tutorial_files/figure-html/plottDecontX-1.png
diff --git a/docs/articles/02_a_la_carte_workflow.html b/docs/articles/02_a_la_carte_workflow.html
diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/deHeatmap-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/deHeatmap-1.png
diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/markerHeatmap-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/markerHeatmap-1.png
diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/pathwayDEHeatmap-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/pathwayDEHeatmap-1.png
diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/plotCluster-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/plotCluster-1.png
diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/plotClusterAbundance-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/plotClusterAbundance-1.png
diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/plotPCA-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/plotPCA-1.png
diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/plotTopHVG-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/plotTopHVG-1.png
diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/plotUMAP-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/plotUMAP-1.png
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diff --git a/docs/articles/02_a_la_carte_workflow_files/figure-html/visVAM-1.png b/docs/articles/02_a_la_carte_workflow_files/figure-html/visVAM-1.png
diff --git a/docs/articles/2d_embedding.html b/docs/articles/2d_embedding.html
diff --git a/docs/articles/2d_embedding_files/figure-html/dm_console_example-1.png b/docs/articles/2d_embedding_files/figure-html/dm_console_example-1.png
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diff --git a/docs/articles/celda_curated_workflow.html b/docs/articles/celda_curated_workflow.html
diff --git a/docs/articles/cell_type_labeling.html b/docs/articles/cell_type_labeling.html
diff --git a/docs/articles/cell_type_labeling_files/figure-html/visualization-1.png b/docs/articles/cell_type_labeling_files/figure-html/visualization-1.png
diff --git a/docs/articles/clustering.html b/docs/articles/clustering.html
diff --git a/docs/articles/clustering_files/figure-html/clst_ScranSNN-1.png b/docs/articles/clustering_files/figure-html/clst_ScranSNN-1.png
diff --git a/docs/articles/clustering_files/figure-html/clst_ScranSNN-2.png b/docs/articles/clustering_files/figure-html/clst_ScranSNN-2.png
diff --git a/docs/articles/clustering_files/figure-html/clst_kmeans-1.png b/docs/articles/clustering_files/figure-html/clst_kmeans-1.png
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diff --git a/docs/articles/clustering_files/figure-html/clst_seurat2-1.png b/docs/articles/clustering_files/figure-html/clst_seurat2-1.png
diff --git a/docs/articles/cmd_qc.html b/docs/articles/cmd_qc.html
diff --git a/docs/articles/cnsl_cellqc.html b/docs/articles/cnsl_cellqc.html
diff --git a/docs/articles/cnsl_cellqc_files/figure-html/plot_umap_scrublet-1.png b/docs/articles/cnsl_cellqc_files/figure-html/plot_umap_scrublet-1.png
diff --git a/docs/articles/cnsl_cellqc_files/figure-html/plots_umap_decontx-1.png b/docs/articles/cnsl_cellqc_files/figure-html/plots_umap_decontx-1.png
diff --git a/docs/articles/cnsl_cellqc_files/figure-html/plots_umap_soupx-1.png b/docs/articles/cnsl_cellqc_files/figure-html/plots_umap_soupx-1.png
diff --git a/docs/articles/cnsl_cellqc_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/cnsl_cellqc_files/figure-html/unnamed-chunk-3-1.png
diff --git a/docs/articles/cnsl_dropletqc.html b/docs/articles/cnsl_dropletqc.html
diff --git a/docs/articles/cnsl_dropletqc_files/figure-html/Count_Violin_after_filtering-1.png b/docs/articles/cnsl_dropletqc_files/figure-html/Count_Violin_after_filtering-1.png
diff --git a/docs/articles/cnsl_dropletqc_files/figure-html/run_kneeplot_barcoderank-1.png b/docs/articles/cnsl_dropletqc_files/figure-html/run_kneeplot_barcoderank-1.png
diff --git a/docs/articles/cnsl_dropletqc_files/figure-html/scatter_emptydrops-1.png b/docs/articles/cnsl_dropletqc_files/figure-html/scatter_emptydrops-1.png
diff --git a/docs/articles/delete_data.html b/docs/articles/delete_data.html