Andersen Lab
Johns Hopkins University
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- United States of America
- http://www.andersenlab.org
- erik.andersen@jhu.edu
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- Ce_geneAnno-sh Public
This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.
AndersenLab/Ce_geneAnno-sh’s past year of commit activity - post-gatk-nf Public
Subset isotype-only vcf, build tree etc. steps after variant calling and isotype assignment
AndersenLab/post-gatk-nf’s past year of commit activity - ce_cb_ct_betatubulin Public
AndersenLab/ce_cb_ct_betatubulin’s past year of commit activity - fq-processing-nf Public
A nextflow pipeline for taking raw sequenced reads (fastqs) and performing trimming, species check, alignment, and genotype checking
AndersenLab/fq-processing-nf’s past year of commit activity - pathogenDiscovery-sh Public
C. elegans pathogen discovery through taxonomic classification from unaligned wild strains reads
AndersenLab/pathogenDiscovery-sh’s past year of commit activity