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github-actions-ci.yml
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name: ci/github-actions
on:
workflow_call:
pull_request:
branches:
- master
push:
branches:
- master
tags_ignore:
- '*'
jobs:
run-light-tests:
env:
SKIP_LIMS: true
TEST_INHOUSE: false
ALLOW_TEST_DOWNLOADS: false
TEST_API_ENDPOINT: "http://api.brain-map.org"
IPFX_TEST_TIMEOUT: 60
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install system packages
run: |
sudo apt-get update
sudo apt-get install -y hdf5-tools curl libhdf5-dev
- name: Install pip dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
- name: Run tests
run: |
pip install -r requirements-test.txt
mkdir -p test-results
git lfs install
git config lfs.url 'https://github.com/AllenInstitute/ipfx.git/info/lfs'
git lfs env
git lfs pull
pip install -e .
python -m pytest --junitxml=test-results/junit.xml --verbose
onprem-tests:
name: on-prem tests
runs-on: ["self-hosted"]
strategy:
matrix:
pyver: ["3.10", "3.11", "3.12", "3.13", "3.14"]
steps:
- uses: actions/checkout@v4
- name: Build docker image
run: |
docker build --build-arg PYTHON_VERSION="${{ matrix.pyver }}" -t "ipfx_${{ matrix.pyver }}:latest" docker
- name: Run test in docker
run: |
DOCKER_IMAGE="ipfx_${{ matrix.pyver }}:latest" ./docker/run_tests_with_docker.sh