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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 359 152

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 24 14

Repositories

Showing 10 of 421 repositories
  • load_behavior_video Public

    First step in behavior video QC pipeline. Loads attached videos, saves gray frames in zarr file, saves metadata.

    AllenInstitute/load_behavior_video’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 6, 2025
  • motion_energy_PCA Public
    AllenInstitute/motion_energy_PCA’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated May 6, 2025
  • compute_motion_energy Public

    Step 2 of Behavior Video QC pipeline. Loads video Barr files and computes motion energy in 3d and

    AllenInstitute/compute_motion_energy’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated May 6, 2025
  • scrattch.taxonomy Public

    Allen Institute Taxonomy building R package

    AllenInstitute/scrattch.taxonomy’s past year of commit activity
    HTML 1 1 9 0 Updated May 5, 2025
  • openscope_v2species Public Forked from AllenInstitute/openscope_loop
    AllenInstitute/openscope_v2species’s past year of commit activity
    Python 0 Apache-2.0 2 0 0 Updated May 5, 2025
  • HMBA_BasalGanglia_Consensus_Taxonomy Public
    AllenInstitute/HMBA_BasalGanglia_Consensus_Taxonomy’s past year of commit activity
    SCSS 0 CC0-1.0 0 0 0 Updated May 5, 2025
  • cell_type_mapper Public

    Repository for storing prototype functionality implementations for the BKP

    AllenInstitute/cell_type_mapper’s past year of commit activity
    Python 26 5 4 2 Updated May 5, 2025
  • standard_morph Public
    AllenInstitute/standard_morph’s past year of commit activity
    Python 0 0 1 0 Updated May 5, 2025
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated May 5, 2025
  • txtox Public

    Experiments to relate gene expression and anatomical location

    AllenInstitute/txtox’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 5, 2025
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