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Stellenbosch University
- South Africa
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01:42
(UTC +02:00) - in/alicen-joy-henning-b41b09223
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Single-cell analysis in Python. Scales to >1M cells.
popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.
A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.
Find Inspiration in Design Elements.
PYangLab / scCCESS
Forked from gedcom/scCCESSSingle-cell Consensus Clusters of Encoded Subspaces
AWS Batch based scalable microbial reads calling pipeline
scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions
lanagarmire / Originator
Forked from thatchayut/OriginatorComputational Framework Separating Single-Cell RNA-Seq by Genetic and Contextual Information
Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬
Table of software for the analysis of single-cell RNA-seq data.
High-quality QR Code generator library in Java, TypeScript/JavaScript, Python, Rust, C++, C.
Statistical Rethinking Course for Jan-Mar 2023
Benchmarking computational doublet-detection methods for single-cell RNA sequencing data
jimhester / scater
Forked from davismcc/archive-scaterSingle cell analysis tools for expression from RNA-seq in R
Code for recreating results for our publication "Programming a Ferroptosis-to-Apoptosis Transition Landscape Revealed Ferroptosis Biomarkers and Repressors for Cancer Therapy"
Biology-centered data-driven quality control for scRNA-seq